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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV210203 SARS-CoV-2/environment/ITA/3233/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373157 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210204 SARS-CoV-2/environment/ITA/3243/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373158 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210205 SARS-CoV-2/environment/ITA/3243/2020 surface glycoprotein (S) gene MT373162 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 wastewater metagenome 469 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 469 100.00
OEAV210206 SARS-CoV-2/environment/ITA/3267/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373156 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-03-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210207 SARS-CoV-2/environment/ITA/3268/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373159 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-03-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210208 SARS-CoV-2/environment/ITA/3269/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373160 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-04-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210209 SARS-CoV-2/environment/ITA/3270/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene MT373161 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-04-30 wastewater metagenome 287 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 287 100.00
OEAV210210 SARS-CoV-2/environment/ITA/3270/2020 surface glycoprotein (S) gene MT373163 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-04-30 wastewater metagenome 469 2020-06-02 raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L. and Suffredini,E. Department of Food Safety 469 100.00
OEAV210211 SARS-CoV-2/environment/PAK/PAK-RIU-ES-01/2020 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes MT539157 RNA viruses Severe acute respiratory syndrome coronavirus 2 Pakistan 2020-04-17 wastewater metagenome 346 2020-05-30 wastewater;sewage sample 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Sharif,S., Khurshid,A., Mahmood,N., Arshad,Y., Salman,M., Ikram,A., Badar,N., Umair,M., Tamim,S., Angez,M., Alam,M. and Ahad,A. Virology 346 100.00
OEAV213090 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/ENV/USA/UF-11/2020 MT476384 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-02-21 metagenome 29894 2020-05-15 door handle 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Lednicky,J.A., Gibson,J.C., Alam,M.M., Stephenson,C.J., Elbadry,M.A. and Morris,J.G. Environmental and Global Health, University of Florida - Gainesville 29894 100.00
OEAV213091 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/ENV/USA/UF-3/2020 MT324684 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-03-25 air metagenome 29889 2020-04-13 breathing air using a VIVAS air 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Shankar,S.N., Wu,C.-Y., Clugston,J.R., Elbadry,M.A., Morris,J.G. Jr. and Lednicky,J.A. Environmental and Global Health, University of Florida - Gainesville 29889 100.00
OEAV213092 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Environment/USA/UF-20/2020 MT670008 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-04-13 air metagenome 29894 2020-06-26 Air sample 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Lednicky,J.A., Wu,C.-Y. and Morris,J.G. Environmental and Global Health, University of Florida, Gainesville 29894 100.00
OEAV213093 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Homosapiens/BGD/BCSIR_NILMRC_118a/2020 MT731653 RNA viruses Severe acute respiratory syndrome coronavirus 2 Bangladesh 2020-06-18 air metagenome 29903 2020-07-08 Air sample 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Mohammad Mahmud,A.S., Uzzaman,M.S., Osman,E., Habib,M.A., Akter,S., Banu,T.A., Sarkar,M.M.H., Goswami,B., Jahan,I., Hossain,M.S., Nafisa,T., Molla,M.M.A., Yeasmin,M., Ghosh,A.K., Shamsuzzaman,A.K.M., Al Din,S.M.S., Ray,U.C., Sajib,S.A., Siddike,S. and Khan,M.S. Genomic Research Lab, Bangladesh Council of Scientific and Industrial Research 29903 100.00
OEAV213147 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/environment/USA/UF-12/2020 MT539729 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-04-23 air metagenome 29895 2020-05-31 Air sample 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Lednicky,J.A., Wu,C.-Y., Lauzardo,M. and Morris,J.G. Environmental and Global Health, University of Florida, Gainesville 29895 100.00
OEAV242543 SARS-CoV-2/environment/CHN/Yantai/2020 surface glycoprotein (S) and ORF3a protein (ORF3a) genes MT911468 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-08-14 food contamination metagenome 1868 2020-08-21 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Jiang,X., Yao,M., Zhang,Y., Li,Y. and Wang,J. Prevention and Control of Viral Infectious Diseases, Shandong Provincial Centers for Disease Control and Prevention 1868 100.00
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